The ceiling of the garbhagriha (sanctum sanctorum) of the Kaner-ki-Putli Temple is square in shape and consists of concentric squares design. It is adorned with a fully bloomed flower in the centre.
On the right corner of the rear or eastern wall of the garbhagriha (sanctum sanctorum), there is another male deity identifiable as a dikapala (deity of the cardinal directions). The four-armed deity, like others, has been subject to damages, with his face entirely erased and three of his arms broken. The well-adorned dikapala is depicted holding a trishula (trident) in his upper right hand. Seated at the bottom is a bull, indicating that this figure may be Ishana, often portrayed holding a trishula with a bull as his vahana (mount).
The lower section of the doorframe of the garbhagriha (sanctum sanctorum) of the Kaner-ki-Putli Temple portrays the river goddesses Ganga and Yamuna. In this picture, on the right side, Ganga is represented, identifiable by the broken makara (crocodile-like mythical creature) at the base. The figures next to the river goddesses depict Shiva as a four-armed figure. He holds a khatvanga (staff with a skull) and a sarpa (snake) in his upper hands. His lower right hand, holding an akshmala (rosary), is in the varadahasta (boon-giving gesture). In his lower left hand, he holds a bowl. He wears a jatamukuta (a crown of matted hair) and is adorned with heavy jewellery. At the bottom left, there is a Nandi that is now damaged. The figure beside Shiva depicts female attendants, while the figure at the end represents Kubera, who is portrayed with two arms and a money bag.
The lalatabimba (lintel) of the garbhagriha (sanctum sanctorum) has an image of Lakulisa—a preceptor of the doctrine of the Pashupata tradition of Shaivism—seated in padmasana (lotus pedestal pose). He is shown with an erect phallus, holding a lakuta (staff) in his left hand and a beejapurak or phala (fruit) in his right hand.
A Shiva linga (aniconic representation of Shiva) is there at the centre of the garbhagriha (sanctum sanctorum) of the Kaner-ki-Putli Temple. Notably, the yonipatta (womb-shaped base) of the Shiva linga is square, deviating from the typical circular shape.